PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g007837m
Common NameCISIN_1g002489mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 589aa    MW: 64821.8 Da    PI: 7.9293
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g007837mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.89.4e-19359458198
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  +L++gD+v+F++ +  
  orange1.1g007837m 359 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDIVTFSRLE-P 448
                        89**************************555566778***************9989999999***9.********************766.7 PP

                        EE..EEEEE- CS
                 B3  89 efelvvkvfr 98 
                        e++lv+++++
  orange1.1g007837m 449 EGKLVMGFRK 458
                        7777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS01359032115IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:2.40.330.103.8E-31355465IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.63E-20356458IPR015300DNA-binding pseudobarrel domain
CDDcd100172.42E-22357458No hitNo description
PfamPF023624.1E-16359458IPR003340B3 DNA binding domain
PROSITE profilePS5086311.293359460IPR003340B3 DNA binding domain
SMARTSM010191.0E-19359460IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 589 aa     Download sequence    Send to blast
MKHKTHPCNP VALSFISVSV FIFNLDLTCL SCNYCYLVLQ ILNIRCFVFC AAILTLILCV  60
YRSIYEEGRF CDTFHVNASG WRCCESCGKR VHCGCITSVH AFTLLDAGGI ECMTCARKNV  120
LVAPTPSWPP SLFYQTPFPE RIKDLSVKNW TQLAGSGPVP WRQAPSLFNS SIPQPELRPR  180
LPYEVDLSAG IDRINASERL SVPSLEKRKL EDFSERLMNG GLKSGSRDIP ENANAGSNCD  240
MQPSSCLNKP QQSSTLKDDS STPHFGLAVS YASPSETNSQ IGVSGSHLRP VVQPPLVKQF  300
HGNLPNGADS LGETQVRNGR PRVDARGRSQ LLPRYWPRFT DQDLQQISGD SNSVITPLFE  360
KMLSASDAGR IGRLVLPKKC AEAYFPPISQ PEGLPLKVQD SKGKEWIFQF RFWPNNNSRM  420
YVLEGVTPCI QNMQLQAGDI VTFSRLEPEG KLVMGFRKAS SASASDQDNE ANKAGTGIPA  480
NGHAELADPS SWSKVDKSGY IATEALGAKS SISRKRKNTT LGSKSKRLKI ENEDVIELKL  540
TWEEAQGLLR PPPNNVPSVV VIEGYEFEEY EDAPILGKPT IFATDNVG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-1535847513130DNA-binding protein RAV1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1514528KRKNTTLGSKSKRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR4920701e-135KR492070.1 UNVERIFIED: Citrus sinensis clone 114-1c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006449227.10.0hypothetical protein CICLE_v10014219mg
SwissprotQ0D5G41e-156Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A067GKC20.0A0A067GKC2_CITSI; Uncharacterized protein
STRINGPOPTR_0004s03530.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.11e-121VP1/ABI3-like 3